THIS WEEK IN SCIENCE
This Week in SCIENCE
May 9 2003, 300 (5621)
Not All Added Iron Is Alike
More than a decade ago, the late John Martin suggested that iron was the
major factor limiting oceanic productivity in the high-nutrient,
low-chlorophyll (HNLC) marine environments of the subarctic Pacific, the
equatorial Pacific, and the Southern Ocean. Tsuda et al. (p. 958) conducted
iron fertilization experiments in the subarctic Pacific Ocean, the last of
the three major ocean regions to be studied this way. Productivity is also
iron-limited, but the observed biological and biogeochemical responses were
quite different from the other HNLC waters. A shift of dominant
phytoplankton species occurred that the authors believe might have also
occurred in HNLC open waters during the past glacial period and that might
happen again if longer and larger scale inputs of iron are introduced into
the oceans.
TSUDA ET AL.
Phonons and Phases in Plutonium
A detailed understanding of the phase diagram of plutonium (Pu) is useful
for predicting how the material will behave under a variety of
environments. The toxicity and radioactivity of Pu can limit experimental
studies, thus increasing our reliance on theoretical predictions of this
element's properties. However, modeling of the phase diagram of Pu is
challenging in that it exhibits six crystallographic allotropes and
calculations that must deal with strong correlations between the f-shell
electrons. Dai et al. (p. 953) calculated the phonon (lattice vibration)
spectra of Pu at high temperatures by taking into account the
electron-electron and electron-phonon interactions. They provide insights
into the contraction that occurs during heating as the phase transforms in
the phase.
Ant Attacks on the Tree Tops
Ants are ubiquitous and abundant in the canopy of tropical rain forest, and
one hypothesis that accounts for this dominance is that tropical forest
ants are herbivores, rather than as omnivores. Davidson et al. (p. 969; see
the Perspective by Hunt) used stable nitrogen isotopes to assess the diets
of canopy ants. What they find is that many ant species appear to be mainly
herbivores, and obtain nitrogen not primarily through predation or
scavenging of animals but more likely through bacterial microsymbionts.
These latter organisms are closely related to either aphid microsymbionts,
known to upgrade nonessential amino acids to essential ones, or related to
the nitrogen fixers that nodulate within the roots of plants. These results
suggest that rainforest plants experience much greater losses to ant
herbivores than previously recognized.
Epoxides Sans Chlorine
Millions of tons of epoxides are made each year, mainly through a process
that relies on chlorine as an oxidant. Kamata et al. (p. 964) report that a
tungsten-based polyoxometalate anion allows for the efficient production of
a wide variety of epoxides using hydrogen peroxide (H2O2) instead. Unlike
many H2O2 routes, this reaction avoids the production of O2 that increases
explosion hazards under industrial conditions.
Ancient Asteroid Accident
A major asteroid collision in the main belt may have produced an increase
flux of meteors to Earth in the mid-Ordovician (480 million years ago), but
evidence of such an event is scant. Schmitz et al. (p. 961) analyzed relict
chromite grains from decomposed meteorites in marine limestone deposited
over about 250,000 square kilometers of southern Sweden and found that all
of the chromite has an L chondrite composition.
Group Snapshot
Many fundamental studies of chemical reactions have focused on systems of
three atoms in order to avoid the complexities that arise when even one of
the products has more than one vibrational mode. Lin et al. (p. 966)
introduce a product imaging technique and applied to the reaction of
fluorine atoms with deuterated methane to produce DF and the CD3 radicals.
This method allowed them to resolve how vibrational energy left in the DF
molecule correlated with vibrational energy in different levels of the n2
or "umbrella" mode of CD
Fire Escapes for Carbon
Boreal forests and their underlying soils sequester carbon that can be
released by wildfires. Wardle et al. (p. 972) provide quantitative
evidence, through the study of an island system in Sweden where different
islands have different fire histories, of how wildfire history influences
ecosystem carbon input, output, and sequestration in boreal forest. Fire
suppression in these forests may increase their role as a net global carbon
sink.
How Bacteria Say No to Drugs
One of the generalized and widespread modes of bacterial resistance to
drugs is the development or acquisition of multidrug pumps that actively
flush out unrelated species of small molecules, thus reducing cytosolic
drug concentrations. Yu et al. (p. 976) describe the structures of four
different small molecules bound to AcrB, one of the multidrug efflux pumps
in Escherichia coli. They find that a central cavity serves as an
all-purpose binding site for small molecules, offering hydrophobic,
aromatic, and van der Waals interactions that can be tailored to
accommodate diverse ligands..
Tiny but Turbulent
The small volumes associated with microfluidic channels can make it
difficult to observe and take advantage of nonlinear rheological effects.
Groisman et al. (p. 955) show that by driving the flow through carefully
designed tortuous channels, they can push the fluid from the normal laminar
flow regime into an elastic turbulence regime. For small changes in flow
rate, they can obtain large changes in pressure drop, and they demonstrate
both a flux stabilizer and a bistable flip-flop memory.
.
The Catalytic Core of the Spliceosome
One of the central complexes in the spliceosome, which removes introns from
pre-messenger RNAs, is SF3b. This complex is involved in the assembly of
components at the all-important branch-point nucleotide (the scissors used
to make the first cut), which lies within cross-linking distance of SF3b
protein p14. Golas et al. (p. 980) report the structure of the SF3b complex
from electron cryomicroscopy. They place two structural elements, a ladder
of HEAT repeats and several RNA-recognition motifs, within the outer shell
and central cavity, respectively.
Proteins Strike a Pose
Conformation switches can be key events in the regulation of protein
activity, but detecting their occurrence can be difficult. Nizak et al. (p.
984) developed a method to select recombinant antibodies rapidly in vitro
for use as conformation sensors. Using antibodies selected to recognize
guanosine triphosphate (GTP)-bound forms of the small GTPase Rab6, a
regulator of intracellular membrane traffic, they determined the
localization and behavior of Rab6{middle dot}GTP in living cells. The
method has the potential to create reagents to enable the study of any
molecule that can be locked in vitro in a particular conformation.
Simply Doing the Job at Hand
In vertebrates, the major events in the cell division cycle--synthesis of
DNA and mitotic division of the cell--are controlled by complexes of
related but distinct cyclin proteins with their partners, the
cyclin-dependent kinases, that can have overlapping activities. Moore et
al. (p. 987) examined the capacity of cyclin B1, which normally promotes
mitosis in combination with cyclin-dependent kinase 1 (Cdk1), to promote
DNA synthesis in extracts of frog eggs. Cyclin B1 could in fact promote DNA
synthesis if it was targeted to the nucleus and if a moderate stimulation
of its activity was attained. Thus, the cyclin B1-Cdk1 complex can
phosphorylate critical targets that initiate DNA synthesis. Cells normally
prevent such action of the complex through control of its localization and
its activation state.
Creating Left-Right Asymmetry in the Hippocampus
The NR2B subunit of the NMDA receptor is a major prerequisite for learning
and memory. A dynamic rearrangement of this subunit occurs during
development and after synaptic modifications. Kawakami et al. (p. 990) show
that, in the adult mouse hippocampus, the NR2B subunit is asymmetrically
distributed in glutamatergic synapses deriving from ipsilateral versus
contralateral afferents. There is also an asymmetric NR2B distribution
between synapses on the basal and apical dendrites of pyramidal neurons.
Eyes Right, Eyes Left
Neurons from retinae of the right and left eyes project to different
regions of the mature brain's dorsal lateral geniculate nucleus (DLGN). To
tease apart the effects of bulk neuronal activity from correlation of
neuronal activity, whereby neurons originating from the same eye fire
together, Huberman et al. (p. 994) have studied the effects of
immunological ablation of amacrine cells in the developing ferret eye.
Without the normally interspersed amacrine cells, the ganglion cells of the
retina retain activity but lose the tendency to correlate that activity
with their near neighbors. Observations of the corresponding DLGN show that
the correlated aspect of that activity is not required for eye-specific
segregation patterns to develop.
Copyright (c) 2003 by the American Association for the Advancement of
Science.
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